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RECOMB
2006
Springer
14 years 7 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
BMCBI
2005
132views more  BMCBI 2005»
13 years 7 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
ISBI
2004
IEEE
14 years 8 months ago
Subpixel Registration in Renal Perfusion MR Image Sequence
We propose a subpixel registration algorithm to deal with the motion induced by breathing for renal perfusion MR image sequences. Our approach minimizes an energy functional that ...
Chien Ho, José M. F. Moura, Ying Sun
BIOCOMP
2009
13 years 8 months ago
Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems
The accurate computational prediction of RNA secondary structures is a difficult task, but an important one, since RNA structure is usually more evolutionarily conserved than prima...
Denise Y. F. Mak, Gary Benson
SODA
2010
ACM
179views Algorithms» more  SODA 2010»
14 years 4 months ago
Property Testing and Parameter Testing for Permutations
There has been great interest in deciding whether a combinatorial structure satisfies some property, or in estimating the value of some numerical function associated with this com...
Carlos Hoppen, Yoshiharu Kohayakawa, Carlos G. T. ...