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    » An Ant-Based Model for Multiple Sequence Alignment
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    ISMB
    1996
    110views Computational Biology» more  ISMB 1996»
    The Megaprior Heuristic for Discovering Protein Sequence Patterns
    13 years 9 months ago
    The Megaprior Heuristic for Discovering Protein Sequence Patterns
    Download  www.aaai.org
    Several computeralgorithms for discovering patterns in groups of protein sequences are in use that are basedon fitting the parametersof a statistical model to a group of related s...
    Timothy L. Bailey, Michael Gribskov
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    NAR
    2011
    256views Computer Vision» more  NAR 2011»
    ModBase, a database of annotated comparative protein structure models, and associated resources
    12 years 10 months ago
    ModBase, a database of annotated comparative protein structure models, and associated resources
    Download  salilab.org
    ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that rel...
    Ursula Pieper, Benjamin M. Webb, David T. Barkan, ...
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    BMCBI
    2004
    126views more  BMCBI 2004»
    A probabilistic model for the evolution of RNA structure
    13 years 7 months ago
    A probabilistic model for the evolution of RNA structure
    Download  www.biomedcentral.com
    Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
    Ian Holmes
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    RECOMB
    2003
    Springer
    123views Computational Biology» more  RECOMB 2003»
    A multi-expert system for the automatic detection of protein domains from sequence information
    14 years 7 months ago
    A multi-expert system for the automatic detection of protein domains from sequence information
    Download  www.cbcb.umd.edu
    We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
    Niranjan Nagarajan, Golan Yona
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    BMCBI
    2005
    169views more  BMCBI 2005»
    MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    13 years 7 months ago
    MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    Download  www.biomedcentral.com
    Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
    Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
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