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BMCBI
2010
117views more  BMCBI 2010»
15 years 4 months ago
Automatic, context-specific generation of Gene Ontology slims
Background: The use of ontologies to control vocabulary and structure annotation has added value to genomescale data, and contributed to the capture and re-use of knowledge across...
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark ...
BMCBI
2010
167views more  BMCBI 2010»
15 years 4 months ago
Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of met
Background: Currently, a number of bioinformatics methods are available to generate appropriate lists of genes from a microarray experiment. While these lists represent an accurat...
Melissa J. Morine, Jolene McMonagle, Sinead Toomey...
171
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BMCBI
2007
167views more  BMCBI 2007»
15 years 4 months ago
A stochastic differential equation model for transcriptional regulatory networks
Background: This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data se...
Adriana Climescu-Haulica, Michelle D. Quirk
BMCBI
2005
153views more  BMCBI 2005»
15 years 4 months ago
Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical
Background: Routine application of gene expression microarray technology is rapidly producing large amounts of data that necessitate new approaches of analysis. The analysis of a ...
Giacomo Finocchiaro, Francesco Mancuso, Heiko M&uu...
161
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PVLDB
2010
120views more  PVLDB 2010»
15 years 3 months ago
EXTRUCT: Using Deep Structural Information in XML Keyword Search
Users who are unfamiliar with database query languages can search XML data sets using keyword queries. Previous work has shown that current XML keyword search methods, although in...
Arash Termehchy, Marianne Winslett
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