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RECOMB
2008
Springer
14 years 8 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
RECOMB
2004
Springer
14 years 8 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
VLDB
2003
ACM
147views Database» more  VLDB 2003»
14 years 8 months ago
RE-tree: an efficient index structure for regular expressions
Due to their expressive power, Regular Expressions (REs) are quickly becoming an integral part of language specifications for several important application scenarios. Many of thes...
Chee Yong Chan, Minos N. Garofalakis, Rajeev Rasto...
VLDB
2007
ACM
126views Database» more  VLDB 2007»
14 years 8 months ago
Querying Complex Structured Databases
Correctly generating a structured query (e.g., an XQuery or a SQL query) requires the user to have a full understanding of the database schema, which can be a daunting task. Alter...
Cong Yu, H. V. Jagadish
VLDB
2007
ACM
143views Database» more  VLDB 2007»
14 years 8 months ago
OLAP over Imprecise Data with Domain Constraints
Several recent papers have focused on OLAP over imprecise data, where each fact can be a region, instead of a point, in a multidimensional space. They have provided a multiple-wor...
Douglas Burdick, AnHai Doan, Raghu Ramakrishnan, S...
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