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» An Efficient Method for Multiple Sequence Alignment
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BMCBI
2005
93views more  BMCBI 2005»
13 years 7 months ago
Multiple sequence alignment accuracy and evolutionary distance estimation
Background: Sequence alignment is a common tool in bioinformatics and comparative genomics. It is generally assumed that multiple sequence alignment yields better results than pai...
Michael S. Rosenberg
NAR
2006
128views more  NAR 2006»
13 years 7 months ago
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
Fabrice Armougom, Sébastien Moretti, Olivie...
CEC
2007
IEEE
14 years 2 months ago
An evolutionary progressive multiple sequence alignment
Abstract This paper presents a new evolutionary method, namely, a Two Phase evolutionary algorithm for multiple sequence alignments. This method is composed of different types of e...
Farhana Naznin, Morikazu Nakamura, Takeo Okazaki, ...
ICANNGA
2007
Springer
112views Algorithms» more  ICANNGA 2007»
14 years 2 months ago
Multiple Sequence Alignment with Evolutionary-Progressive Method
A new evolutionary-progressive method for Multiple Sequence Alignment problem is proposed. The method efficiently combines flexibility of evolutionary approach with speed and accu...
Pawel Kupis, Jacek Mandziuk
AINA
2006
IEEE
14 years 2 months ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen