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CONSTRAINTS
2006
105views more  CONSTRAINTS 2006»
13 years 9 months ago
Symmetry Breaking Constraints for Value Symmetries in Constraint Satisfaction
Constraint satisfaction problems (CSPs) sometimes contain both variable symmetries and value symmetries, causing adverse effects on CSP solvers based on tree search. As a remedy, s...
Y. Law, J. Lee
BMCBI
2010
139views more  BMCBI 2010»
13 years 9 months ago
A global optimization algorithm for protein surface alignment
Background: A relevant problem in drug design is the comparison and recognition of protein binding sites. Binding sites recognition is generally based on geometry often combined w...
Paola Bertolazzi, Concettina Guerra, Giampaolo Liu...
APBC
2004
173views Bioinformatics» more  APBC 2004»
13 years 10 months ago
RNA Secondary Structure Prediction with Simple Pseudoknots
Pseudoknots are widely occurring structural motifs in RNA. Pseudoknots have been shown to be functionally important in different RNAs which play regulatory, catalytic, or structur...
Jitender S. Deogun, Ruben Donts, Olga Komina, Fang...
WWW
2007
ACM
14 years 9 months ago
Supervised rank aggregation
This paper is concerned with rank aggregation, the task of combining the ranking results of individual rankers at meta-search. Previously, rank aggregation was performed mainly by...
Yu-Ting Liu, Tie-Yan Liu, Tao Qin, Zhiming Ma, Han...
BMCBI
2006
194views more  BMCBI 2006»
13 years 9 months ago
Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems
Background: We consider the problem of parameter estimation (model calibration) in nonlinear dynamic models of biological systems. Due to the frequent ill-conditioning and multi-m...
Maria Rodriguez-Fernandez, Jose A. Egea, Julio R. ...