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» An Evidence Ontology for Use in Pathway Genome Databases
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BMCBI
2005
173views more  BMCBI 2005»
13 years 8 months ago
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis
Background: The large amount of completely sequenced genomes allows genomic context analysis to predict reliable functional associations between prokaryotic proteins. Major method...
François Enault, Karsten Suhre, Jean-Michel...
BMCBI
2007
173views more  BMCBI 2007»
13 years 8 months ago
CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences
Background: Cowpea [Vigna unguiculata (L.) Walp.] is one of the most important food and forage legumes in the semiarid tropics because of its ability to tolerate drought and grow ...
Xianfeng Chen, Thomas W. Laudeman, Paul J. Rushton...
NAR
2008
174views more  NAR 2008»
13 years 7 months ago
miRGator: an integrated system for functional annotation of microRNAs
MicroRNAs (miRNAs) constitute an important class of regulators that are involved in various cellular and disease processes. However, the functional significance of each miRNA is m...
Seungyoon Nam, Bumjin Kim, Seokmin Shin, Sanghyuk ...
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
13 years 6 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
SEMCO
2008
IEEE
14 years 3 months ago
TcruziKB: Enabling Complex Queries for Genomic Data Exploration
We developed a novel analytical environment to aid in the examination of the extensive amount of interconnected data available for genome projects. Our focus is to enable ity and ...
Pablo N. Mendes, Bobby McKnight, Amit P. Sheth, Je...