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» An Experiment with Ontology Mapping using Concept Similarity
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BMCBI
2004
144views more  BMCBI 2004»
13 years 9 months ago
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
Background: The function of a novel gene product is typically predicted by transitive assignment of annotation from similar sequences. We describe a novel method, GOtcha, for pred...
David M. A. Martin, Matthew Berriman, Geoffrey J. ...
WWW
2007
ACM
14 years 9 months ago
Computer-Supported Collaborative Knowledge Modeling in Ecology
We describe collaborative efforts between a knowledge representation team, a community of scientists, and scientific information managers in developing knowledge models for ecolog...
Deana Pennington, Joshua S. Madin, Ferdinando Vill...
TKDE
2010
224views more  TKDE 2010»
13 years 7 months ago
Probabilistic Topic Models for Learning Terminological Ontologies
—Probabilistic topic models were originally developed and utilised for document modeling and topic extraction in Information Retrieval. In this paper we describe a new approach f...
Wang Wei, Payam M. Barnaghi, Andrzej Bargiela
ICIAR
2005
Springer
14 years 2 months ago
Shape Similarity Measurement for Boundary Based Features
In this study, we propose two algorithms for measuring the distance between shape boundaries. In the algorithms, shape boundary is represented by the Beam Angle Statistics (BAS), w...
Nafiz Arica, Fatos T. Yarman-Vural
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
14 years 3 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe