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» An LZ78 Based String Kernel
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RECOMB
2004
Springer
14 years 7 months ago
A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs
The prediction of translation initiation sites (TISs) in eukaryotic mRNAs has been a challenging problem in computational molecular biology. In this paper, we present a new algori...
Haifeng Li, Tao Jiang
BCBGC
2008
13 years 8 months ago
BMA - Boolean Matrices as Model for Motif Kernels
We introduce the data model BM, which specifies kernels of motifs by means of Boolean matrices. Different from position frequency matrices these only specify which bases can appea...
Jan Schröder, Manfred Schimmler, Heiko Schr&o...
ICML
2003
IEEE
14 years 8 months ago
Marginalized Kernels Between Labeled Graphs
A new kernel function between two labeled graphs is presented. Feature vectors are defined as the counts of label paths produced by random walks on graphs. The kernel computation ...
Hisashi Kashima, Koji Tsuda, Akihiro Inokuchi
ICPR
2010
IEEE
13 years 10 months ago
Kernel-Based Implicit Regularization of Structured Objects
Weighted graph regularization provides a rich framework that allows to regularize functions defined over the vertices of a weighted graph. Until now, such a framework has been only...
François-Xavier Dupé, Sébastien Bougleux, Luc B...
BIOINFORMATICS
2005
71views more  BIOINFORMATICS 2005»
13 years 7 months ago
Semi-supervised protein classification using cluster kernels
A key issue in supervised protein classification is the representation of input sequences of amino acids. Recent work using string kernels for protein data has achieved state-of-t...
Jason Weston, Christina S. Leslie, Eugene Ie, Deng...