Motivation: Existing methods for protein sequence analysis are generally firstorder and inherently assume that each position is independent. We develop a general framework for int...
Martin Madera, Ryan Calmus, Grant Thiltgen, Kevin ...
Many applications in text and speech processing require the analysis of distributions of variable-length sequences. We recently introduced a general kernel framework, rational ker...
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Linear techniques are widely used to reduce the dimension of image representation spaces in applications such as image indexing and object recognition. Optimal Component Analysis ...
Yiming Wu, Xiuwen Liu, Washington Mio, Kyle A. Gal...