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» An application of almost increasing sequences
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BMCBI
2007
115views more  BMCBI 2007»
13 years 6 months ago
Comparing sequences without using alignments: application to HIV/SIV subtyping
Background: In general, the construction of trees is based on sequence alignments. This procedure, however, leads to loss of informationwhen parts of sequence alignments (for inst...
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Z...
COMBINATORICS
2000
72views more  COMBINATORICS 2000»
13 years 6 months ago
Tournament Sequences and Meeussen Sequences
A tournament sequence is an increasing sequence of positive integers (t1, t2, . . .) such that t1 = 1 and ti+1 2ti. A Meeussen sequence is an increasing sequence of positive inte...
Matthew Cook, Michael Kleber
IPPS
2003
IEEE
13 years 12 months ago
Sequence Alignment on the Cray MTA-2
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
Shahid H. Bokhari, Jon R. Sauer
AAMAS
2005
Springer
14 years 4 days ago
Learning to Coordinate Using Commitment Sequences in Cooperative Multi-agent Systems
We report on an investigation of the learning of coordination in cooperative multi-agent systems. Specifically, we study solutions that are applicable to independent agents i.e. ...
Spiros Kapetanakis, Daniel Kudenko, Malcolm J. A. ...
BIOCOMP
2006
13 years 8 months ago
Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study
- Aligning specific sequences against other known sequences in a database is a central aspect of bioinformatics. New experimental data being added continuously to these databases n...
Pradeep Nair, Eugene John