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CCE
2005
13 years 8 months ago
Selecting maximally informative genes
Microarray experiments are emerging as one of the main driving forces in modern biology. By allowing the simultaneous monitoring of the expression of the entire genome for a given...
Ioannis P. Androulakis
BMCBI
2007
116views more  BMCBI 2007»
13 years 8 months ago
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement
Background: Biological information is commonly used to cluster or classify entities of interest such as genes, conditions, species or samples. However, different sources of data c...
Francisco R. Pinto, João A. Carriço,...
CIBCB
2006
IEEE
14 years 2 months ago
A Systematic Computational Approach for Transcription Factor Target Gene Prediction
— Computational prediction of transcription factor’s binding sites and regulatory target genes has great value to the biological studies of cellular process. Existing practices...
Ji He, Xinbin Dai, Xuechun Zhao
BMCBI
2011
13 years 3 months ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
CAISE
2009
Springer
14 years 1 days ago
Data-Flow Anti-patterns: Discovering Data-Flow Errors in Workflows
Despite the abundance of analysis techniques to discover control-flow errors in workflow designs, there is hardly any support for w verification. Most techniques simply abstract fr...
Nikola Trcka, Wil M. P. van der Aalst, Natalia Sid...