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ER
2007
Springer
187views Database» more  ER 2007»
14 years 2 months ago
Metamodeling Integration Architecture for Open Biomedical Ontologies: The GO Extensions' Case Study
New technologies used in biology are generating huge quantities of data; up to two petabytes of overall data are to be expected by the end of the decade. Modern biology also has t...
Marie-Noëlle Terrasse, Marinette Savonnet, Er...
LREC
2008
166views Education» more  LREC 2008»
13 years 10 months ago
KnoFusius: a New Knowledge Fusion System for Interpretation of Gene Expression Data
This paper introduces a new architecture that aims at combining molecular biology data with information automatically extracted from scientific literature (using text mining techn...
Pavel Smrz
BMCBI
2007
134views more  BMCBI 2007»
13 years 8 months ago
Benchmarking natural-language parsers for biological applications using dependency graphs
Background: Interest is growing in the application of syntactic parsers to natural language processing problems in biology, but assessing their performance is difficult because di...
Andrew B. Clegg, Adrian J. Shepherd
JMLR
2010
145views more  JMLR 2010»
13 years 3 months ago
Event based text mining for integrated network construction
The scientific literature is a rich and challenging data source for research in systems biology, providing numerous interactions between biological entities. Text mining technique...
Yvan Saeys, Sofie Van Landeghem, Yves Van de Peer
ICTAI
2008
IEEE
14 years 3 months ago
Information Extraction as an Ontology Population Task and Its Application to Genic Interactions
Ontologies are a well-motivated formal representation to model knowledge needed to extract and encode data from text. Yet, their tight integration with Information Extraction (IE)...
Alain-Pierre Manine, Érick Alphonse, Philip...