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RIAO
2007
13 years 9 months ago
Optimizations of Local Edition for Evaluating Similarity Between Monophonic Musical Sequences
Abstract: Melody is an important property for the perceptual description of Western musical pieces. In the monophonic context, retrieval systems based on melodic similarity general...
Pierre Hanna, Pascal Ferraro
BMCBI
2007
128views more  BMCBI 2007»
13 years 8 months ago
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
BMCBI
2008
140views more  BMCBI 2008»
13 years 8 months ago
SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
Background: Protein structure prediction methods provide accurate results when a homologous protein is predicted, while poorer predictions are obtained in the absence of homologou...
Lukasz A. Kurgan, Krzysztof J. Cios, Ke Chen 0003
BMCBI
2006
141views more  BMCBI 2006»
13 years 8 months ago
Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences
Background: The number of k-words shared between two sequences is a simple and effcient alignment-free sequence comparison method. This statistic, D2, has been used for the cluste...
Sylvain Forêt, Miriam R. Kantorovitz, Conrad...
BMCBI
2010
177views more  BMCBI 2010»
13 years 8 months ago
Modular composition predicts kinase/substrate interactions
Background: Phosphorylation events direct the flow of signals and metabolites along cellular protein networks. Current annotations of kinase-substrate binding events are far from ...
Yichuan Liu, Aydin Tozeren