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» An integrative approach to modeling biological networks
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BMCBI
2010
129views more  BMCBI 2010»
13 years 7 months ago
Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks
Background: Network co-regulated modules are believed to have the functionality of packaging multiple biological entities, and can thus be assumed to coordinate many biological fu...
Lina Chen, Hong Wang, Liangcai Zhang, Wan Li, Qian...
BMCBI
2006
112views more  BMCBI 2006»
13 years 7 months ago
A correlated motif approach for finding short linear motifs from protein interaction networks
Background: An important class of interaction switches for biological circuits and disease pathways are short binding motifs. However, the biological experiments to find these bin...
Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kion...
RECOMB
2004
Springer
14 years 8 months ago
Learning Regulatory Network Models that Represent Regulator States and Roles
Abstract. We present an approach to inferring probabilistic models of generegulatory networks that is intended to provide a more mechanistic representation of transcriptional regul...
Keith Noto, Mark Craven
IJDMB
2011
129views more  IJDMB 2011»
12 years 11 months ago
Modelling gene and protein regulatory networks with Answer Set Programming
: Recently, many approaches to model regulatory networks have been proposed in the systems biology domain, however the task is far from being solved. In this paper we propose an an...
Timur Fayruzov, Jeroen Janssen, Dirk Vermeir, Chri...
NN
2006
Springer
13 years 7 months ago
Homeostatic synaptic scaling in self-organizing maps
Various forms of the self-organizing map (SOM) have been proposed as models of cortical development [Choe Y., Miikkulainen R., (2004). Contour integration and segmentation with se...
Thomas J. Sullivan, Virginia R. de Sa