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BMCBI
2007
139views more  BMCBI 2007»
13 years 7 months ago
Significance analysis of microarray transcript levels in time series experiments
Background: Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over ...
Barbara Di Camillo, Gianna Toffolo, Sreekumaran K....
IMSCCS
2006
IEEE
14 years 1 months ago
Clustering of Gene Expression Data: Performance and Similarity Analysis
Background: DNA Microarray technology is an innovative methodology in experimental molecular biology, which has produced huge amounts of valuable data in the profile of gene expre...
Longde Yin, Chun-Hsi Huang
PDP
2003
IEEE
14 years 9 days ago
Performance Modeling of Scientific Applications: Scalability Analysis of LAPW0
This paper presents a high-level approach for assessing the performance behavior of complex scientific applications running on a high-performance system through simulation. The pr...
Thomas Fahringer, Nicola Mazzocca, Massimiliano Ra...
BMCBI
2010
154views more  BMCBI 2010»
13 years 7 months ago
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
Background: A major goal of molecular biology is determining the mechanisms that control the transcription of genes. Motif Enrichment Analysis (MEA) seeks to determine which DNA-b...
Robert C. McLeay, Timothy L. Bailey
CSE
2011
IEEE
12 years 6 months ago
Performance Modeling of Hybrid MPI/OpenMP Scientific Applications on Large-scale Multicore Cluster Systems
In this paper, we present a performance modeling framework based on memory bandwidth contention time and a parameterized communication model to predict the performance of OpenMP, M...
Xingfu Wu, Valerie E. Taylor