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IPPS
2010
IEEE
15 years 2 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
134
Voted
GECCO
2006
Springer
132views Optimization» more  GECCO 2006»
15 years 8 months ago
The role of diverse populations in phylogenetic analysis
The most popular approaches for reconstructing phylogenetic trees attempt to solve NP-hard optimization criteria such as maximum parsimony (MP). Currently, the bestperforming heur...
Tiffani L. Williams, Marc L. Smith
GECCO
2008
Springer
126views Optimization» more  GECCO 2008»
15 years 5 months ago
The impact of population size on code growth in GP: analysis and empirical validation
The crossover bias theory for bloat [18] is a recent result which predicts that bloat is caused by the sampling of short, unfit programs. This theory is clear and simple, but it ...
Riccardo Poli, Nicholas Freitag McPhee, Leonardo V...
ISBI
2011
IEEE
14 years 8 months ago
Extraction and analysis of actin networks based on Open Active Contour models
Network structures formed by actin filaments are present in many kinds of fluorescence microscopy images. In order to quantify the conformations and dynamics of such actin fila...
Ting Xu, Hongsheng Li, Tian Shen, Nikola Ojkic, Di...
COMPGEOM
2010
ACM
15 years 9 months ago
The 2-center problem in three dimensions
Let P be a set of n points in R3 . The 2-center problem for P is to find two congruent balls of the minimum radius whose union covers P. We present two randomized algorithms for ...
Pankaj K. Agarwal, Rinat Ben Avraham, Micha Sharir