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BMCBI
2008
115views more  BMCBI 2008»
13 years 7 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
IPPS
2005
IEEE
14 years 1 months ago
BioFilter: An Architecture for Parallel Deployment and Dynamic Chaining of Standalone Bioinformatics Tools
A large number of bioinformatics analysis tools available today are processor intensive. Keeping in mind that the amount of biological data to be analyzed is growing steadily, and...
Thomas S. Brettin, Avinash Kewalramani
IEEEPACT
2008
IEEE
14 years 1 months ago
The PARSEC benchmark suite: characterization and architectural implications
This paper presents and characterizes the Princeton Application Repository for Shared-Memory Computers (PARSEC), a benchmark suite for studies of Chip-Multiprocessors (CMPs). Prev...
Christian Bienia, Sanjeev Kumar, Jaswinder Pal Sin...
ICPP
2009
IEEE
14 years 2 months ago
Mapping the FDTD Application to Many-Core Chip Architectures
—This paper reports a study of mapping the Finite Difference Time Domain (FDTD) application to the IBM Cyclops64 (C64) many-core chip architecture [1]. C64 is chosen for this stu...
Daniel Orozco, Guang R. Gao
EUROPAR
2003
Springer
14 years 23 days ago
DeWiz - A Modular tool Architecture for Parallel Program Analysis
Dieter Kranzlmüller, Michael Scarpa, Jens Vol...