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ISMB
2000
13 years 9 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
BIOINFORMATICS
2011
12 years 11 months ago
When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks
Motivation: Enormous, and constantly increasing quantity of biological information is represented in protein interaction network databases. Most of these data are freely accessibl...
Gábor Iván, Vince Grolmusz
BMCBI
2008
108views more  BMCBI 2008»
13 years 8 months ago
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Background: Motif finding algorithms have developed in their ability to use computationally efficient methods to detect patterns in biological sequences. However the posterior cla...
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arl...
SIPS
2008
IEEE
14 years 2 months ago
Analysis of belief propagation for hardware realization
Belief propagation has become a popular technique for solving computer vision problems, such as stereo estimation and image denoising. However, it requires large memory and bandwi...
Chao-Chung Cheng, Chia-Kai Liang, Yen-Chieh Lai, H...
CCGRID
2010
IEEE
13 years 9 months ago
Streamflow Programming Model for Data Streaming in Scientific Workflows
Geo-sciences involve large-scale parallel models, high resolution real time data from highly asynchronous and heterogeneous sensor networks and instruments, and complex analysis a...
Chathura Herath, Beth Plale