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» Analyzing symmetry in biological systems
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TCSB
2010
13 years 6 months ago
Biomodel Engineering - From Structure to Behavior
Biomodel engineering is the science of designing, constructing and analyzing computational models of biological systems. It forms a systematic and powerful extension of earlier mat...
Rainer Breitling, Robin Donaldson, David R. Gilber...
ENTCS
2007
96views more  ENTCS 2007»
13 years 7 months ago
Semantics of Biological Regulatory Networks
The aim of the paper is to revisit the model of Biological Regulatory Networks (BRN) which was proposed by René Thomas to model the interactions between a set of genes. We give a...
Gilles Bernot, Franck Cassez, Jean-Paul Comet, Fra...
BMCBI
2006
123views more  BMCBI 2006»
13 years 7 months ago
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology
Background: The biological information in genomic expression data can be understood, and computationally extracted, in the context of systems of interacting molecules. The automat...
Bruz Marzolf, Eric W. Deutsch, Patrick Moss, David...
POPL
2008
ACM
14 years 8 months ago
Systems biology, models, and concurrency
Models will play a central role in the representation, storage, manipulation, and communication of knowledge in systems biology. Models capable of fulfilling such a role will like...
Walter Fontana
RECOMB
2005
Springer
14 years 8 months ago
Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes
Many years of experimental and computational molecular biology of model organisms such as Escherichia coli and Saccharomyces cerevisiae has elucidated the gene regulatory network i...
Michiel J. L. de Hoon, Dennis Vitkup