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» Analyzing the Uses of a Software Modeling Tool
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BMCBI
2008
118views more  BMCBI 2008»
13 years 8 months ago
Kismeth: Analyzer of plant methylation states through bisulfite sequencing
Background: There is great interest in probing the temporal and spatial patterns of cytosine methylation states in genomes of a variety of organisms. It is hoped that this will sh...
Eyal Gruntman, Yijun Qi, R. Keith Slotkin, Ted Roe...
ICSE
2011
IEEE-ACM
12 years 11 months ago
The quamoco tool chain for quality modeling and assessment
Continuous quality assessment is crucial for the long-term success of evolving software. On the one hand, code analysis tools automatically supply quality indicators, but do not p...
Florian Deissenboeck, Lars Heinemann, Markus Herrm...
AMAST
2010
Springer
13 years 3 months ago
Integrating Maude into Hets
Maude modules can be understood as models that can be formally analyzed and verified with respect to different properties expressing various formal requirements. However, Maude lac...
Mihai Codescu, Till Mossakowski, Adrián Rie...
BMCBI
2007
137views more  BMCBI 2007»
13 years 8 months ago
GEVALT: An integrated software tool for genotype analysis
Background: Genotype information generated by individual and international efforts carries the promise of revolutionizing disease studies and the association of phenotypes with al...
Ofir Davidovich, Gad Kimmel, Ron Shamir
BMCBI
2010
124views more  BMCBI 2010»
13 years 8 months ago
A factor model to analyze heterogeneity in gene expression
Background: Microarray technology allows the simultaneous analysis of thousands of genes within a single experiment. Significance analyses of transcriptomic data ignore the gene d...
Yuna Blum, Guillaume Le Mignon, Sandrine Lagarrigu...