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» Analyzing time series gene expression data
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BMCBI
2007
132views more  BMCBI 2007»
13 years 7 months ago
Analysis of probe level patterns in Affymetrix microarray data
Background: Microarrays have been used extensively to analyze the expression profiles for thousands of genes in parallel. Most of the widely used methods for analyzing Affymetrix ...
Alexander C. Cambon, Abdelnaby Khalyfa, Nigel G. F...
BMCBI
2008
201views more  BMCBI 2008»
13 years 7 months ago
A copula method for modeling directional dependence of genes
Background: Genes interact with each other as basic building blocks of life, forming a complicated network. The relationship between groups of genes with different functions can b...
Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap...
WABI
2005
Springer
14 years 1 months ago
Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds
d Abstract] Tamir Tuller , Efrat Oron , Erez Makavy , Daniel A. Chamovitz † , and Benny Chor ‡ Tel-Aviv University, Tel-Aviv 69978, Israel. Abstract. We study gene expression d...
Tamir Tuller, Efrat Oron, Erez Makavy, Daniel A. C...
CMSB
2006
Springer
13 years 11 months ago
Regulatory Network Reconstruction Using Stochastic Logical Networks
Abstract. This paper presents a method for regulatory network reconstruction from experimental data. We propose a mathematical model for regulatory interactions, based on the work ...
Bartek Wilczynski, Jerzy Tiuryn
BMCBI
2006
81views more  BMCBI 2006»
13 years 7 months ago
A fisheye viewer for microarray-based gene expression data
Background: Microarray has been widely used to measure the relative amounts of every mRNA transcript from the genome in a single scan. Biologists have been accustomed to reading t...
Min Wu, Cheng Thao, Xiangming Mu, Ethan V. Munson