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» Analyzing time series gene expression data
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BMCBI
2007
103views more  BMCBI 2007»
15 years 4 months ago
Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis
Background: To better understand the response of urinary epithelial (urothelial) cells to Enterococcus faecalis, a uropathogen that exhibits resistance to multiple antibiotics, a ...
Mikhail G. Dozmorov, Kimberly D. Kyker, Ricardo Sa...
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
15 years 8 months ago
Minimum Entropy Clustering and Applications to Gene Expression Analysis
Clustering is a common methodology for analyzing the gene expression data. In this paper, we present a new clustering algorithm from an information-theoretic point of view. First,...
Haifeng Li, Keshu Zhang, Tao Jiang
BMCBI
2010
181views more  BMCBI 2010»
15 years 4 months ago
Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes
Background: In many microarray experiments, analysis is severely hindered by a major difficulty: the small number of samples for which expression data has been measured. When one ...
Amit Zeisel, Amnon Amir, Wolfgang J. Köstler,...
BMCBI
2010
135views more  BMCBI 2010»
15 years 4 months ago
Simple and flexible classification of gene expression microarrays via Swirls and Ripples
Background: A simple classification rule with few genes and parameters is desirable when applying a classification rule to new data. One popular simple classification rule, diagon...
Stuart G. Baker
BMCBI
2006
96views more  BMCBI 2006»
15 years 4 months ago
Bayesian detection of periodic mRNA time profiles without use of training examples
Background: Detection of periodically expressed genes from microarray data without use of known periodic and non-periodic training examples is an important problem, e.g. for ident...
Claes R. Andersson, Anders Isaksson, Mats G. Gusta...