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» Ancestral sequence alignment under optimal conditions
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TC
2010
13 years 8 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
RECOMB
2006
Springer
14 years 10 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
ALT
2008
Springer
13 years 11 months ago
Some Sufficient Conditions on an Arbitrary Class of Stochastic Processes for the Existence of a Predictor
Abstract. We consider the problem of sequence prediction in a probabilistic setting. Let there be given a class C of stochastic processes (probability measures on the set of one-wa...
Daniil Ryabko
BMCBI
2005
162views more  BMCBI 2005»
13 years 9 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
ECCV
2002
Springer
14 years 11 months ago
Maximizing Rigidity: Optimal Matching under Scaled-Orthography
Establishing point correspondences between images is a key step for 3D-shape computation. Nevertheless, shape extraction and point correspondence are treated, usually, as two diffe...
João Costeira, João Maciel