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2007
13 years 8 months ago
AMP: Adaptive Multi-stream Prefetching in a Shared Cache
Abstract— Prefetching is a widely used technique in modern data storage systems. We study the most widely used class of prefetching algorithms known as sequential prefetching. Th...
Binny S. Gill, Luis Angel D. Bathen
BMCBI
2007
139views more  BMCBI 2007»
13 years 7 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
BMCBI
2007
102views more  BMCBI 2007»
13 years 7 months ago
Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL
The bio-ontology community falls into two camps: first we have biology domain experts, who actually hold the knowledge we wish to capture in ontologies; second, we have ontology s...
Mikel Egaña Aranguren, Sean Bechhofer, Phil...
CCR
2006
135views more  CCR 2006»
13 years 7 months ago
You must be joking...: should the internet have an ON/OFF switch?
If despite your better judgment you decide to read this article, keep in mind that it was written during the summer, and this has been the hottest summer ever. To avoid such artic...
Michalis Faloutsos
BMCBI
2005
89views more  BMCBI 2005»
13 years 7 months ago
An empirical analysis of training protocols for probabilistic gene finders
Background: Generalized hidden Markov models (GHMMs) appear to be approaching acceptance as a de facto standard for state-of-the-art ab initio gene finding, as evidenced by the re...
William H. Majoros, Steven Salzberg