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    BMCBI
    2008
    128views more  BMCBI 2008»
    In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
    13 years 8 months ago
    In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
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    Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
    Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
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    BMCBI
    2010
    153views more  BMCBI 2010»
    Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
    13 years 8 months ago
    Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
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    Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
    Benedikt Zacher, Pei Fen Kuan, Achim Tresch
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    BMCBI
    2007
    148views more  BMCBI 2007»
    Evaluation of gene-expression clustering via mutual information distance measure
    13 years 8 months ago
    Evaluation of gene-expression clustering via mutual information distance measure
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    Background: The definition of a distance measure plays a key role in the evaluation of different clustering solutions of gene expression profiles. In this empirical study we compa...
    Ido Priness, Oded Maimon, Irad E. Ben-Gal
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    BMCBI
    2008
    116views more  BMCBI 2008»
    The combination approach of SVM and ECOC for powerful identification and classification of transcription factor
    13 years 8 months ago
    The combination approach of SVM and ECOC for powerful identification and classification of transcription factor
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    Background: Transcription factors (TFs) are core functional proteins which play important roles in gene expression control, and they are key factors for gene regulation network co...
    Guangyong Zheng, Ziliang Qian, Qing Yang, Chaochun...
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    BMCBI
    2007
    131views more  BMCBI 2007»
    On the detection of functionally coherent groups of protein domains with an extension to protein annotation
    13 years 8 months ago
    On the detection of functionally coherent groups of protein domains with an extension to protein annotation
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    Background: Protein domains coordinate to perform multifaceted cellular functions, and domain combinations serve as the functional building blocks of the cell. The available metho...
    William A. McLaughlin, Ken Chen, Tingjun Hou, Wei ...
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