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NAR
2002
111views more  NAR 2002»
13 years 7 months ago
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
The DNA Data Bank of Japan (DDBJ, http:// www.ddbj.nig.ac.jp) has made an effort to collect as much data as possible mainly from Japanese researchers. The increase rates of the da...
Yoshio Tateno, Tadashi Imanishi, Satoru Miyazaki, ...
BMCBI
2002
137views more  BMCBI 2002»
13 years 7 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2005
153views more  BMCBI 2005»
13 years 7 months ago
Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text
Background: The BioCreative text mining evaluation investigated the application of text mining methods to the task of automatically extracting information from text in biomedical ...
Soumya Ray, Mark Craven
CSB
2003
IEEE
124views Bioinformatics» more  CSB 2003»
14 years 29 days ago
SMASHing regulatory sites in DNA by human
Regulatory sequence elements provide important clues to understanding and predicting gene expression. Although the binding sites for hundreds of transcription factors are known, t...
Mihaela Zavolan, Nicholas D. Socci, Nikolaus Rajew...
BMCBI
2005
143views more  BMCBI 2005»
13 years 7 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...