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BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
Kevin Brick, Elisabetta Pizzi
BMCBI
2007
133views more  BMCBI 2007»
13 years 7 months ago
Semantic integration to identify overlapping functional modules in protein interaction networks
Background: The systematic analysis of protein-protein interactions can enable a better understanding of cellular organization, processes and functions. Functional modules can be ...
Young-Rae Cho, Woochang Hwang, Murali Ramanathan, ...
ICWS
2009
IEEE
13 years 5 months ago
From Workflow Models to Executable Web Service Interfaces
Workflow models have been used and refined for years to execute processes within organisations. To deal with collaborative processes (choreographies) these internal workflow model...
Armin Haller, Mateusz Marmolowski, Walid Gaaloul, ...
BMCBI
2006
156views more  BMCBI 2006»
13 years 7 months ago
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
Background: Horizontal gene transfer (HGT) is considered a strong evolutionary force shaping the content of microbial genomes in a substantial manner. It is the difference in spee...
Stephan Waack, Oliver Keller, Roman Asper, Thomas ...
CORR
2010
Springer
174views Education» more  CORR 2010»
13 years 4 months ago
A Proof Carrying Code Framework for Inlined Reference Monitors in Java Bytecode
We propose a lightweight approach for certification of Java bytecode monitor inlining using proof-carrying code. The main purpose of such a framework is to enable development use ...
Mads Dam, Andreas Lundblad