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» Annotation-based inference of transporter function
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BMCBI
2007
115views more  BMCBI 2007»
13 years 7 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
BMCBI
2008
116views more  BMCBI 2008»
13 years 7 months ago
IgTM: An algorithm to predict transmembrane domains and topology in proteins
Background: Due to their role of receptors or transporters, membrane proteins play a key role in many important biological functions. In our work we used Grammatical Inference (GI...
Piedachu Peris, Damián López, Marcel...
BIBE
2009
IEEE
185views Bioinformatics» more  BIBE 2009»
14 years 13 days ago
Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks
Gene and protein structural and functional annotations expressed through controlled terminologies and ontologies are paramount especially for the aim of inferring new biomedical k...
Marco Tagliasacchi, Marco Masseroli
HASKELL
2006
ACM
14 years 1 months ago
Strong types for relational databases
Haskell’s type system with multi-parameter constructor classes and functional dependencies allows static (compile-time) computations to be expressed by logic programming on the ...
Alexandra Silva, Joost Visser
INFOCOM
2002
IEEE
14 years 7 days ago
Impromptu Measurement Infrastructures using RTP
— Dedicated infrastructures for end-to-end measurements are complex to deploy and manage. Equipment cost, the requirements for reporting bandwidth, and the administrative diversi...
Ramón Cáceres, Nick G. Duffield, Tim...