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    BMCBI
    2007
    197views more  BMCBI 2007»
    Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
    13 years 10 months ago
    Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
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    Background: Boolean network (BN) modeling is a commonly used method for constructing gene regulatory networks from time series microarray data. However, its major drawback is that...
    Haseong Kim, Jae K. Lee, Taesung Park
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    BMCBI
    2008
    170views more  BMCBI 2008»
    A genetic approach for building different alphabets for peptide and protein classification
    13 years 10 months ago
    A genetic approach for building different alphabets for peptide and protein classification
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    Background: In this paper, it is proposed an optimization approach for producing reduced alphabets for peptide classification, using a Genetic Algorithm. The classification task i...
    Loris Nanni, Alessandra Lumini
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    BMCBI
    2008
    124views more  BMCBI 2008»
    A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
    13 years 10 months ago
    A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
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    Background: Microarray pre-processing usually consists of normalization and summarization. Normalization aims to remove non-biological variations across different arrays. The norm...
    Huanying Ge, Chao Cheng, Lei M. Li
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    BMCBI
    2008
    211views more  BMCBI 2008»
    CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
    13 years 10 months ago
    CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
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    Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
    Svetlin Manavski, Giorgio Valle
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    CERA
    2010
    105views more  CERA 2010»
    Implications of Alternative Multilevel Design Methods for Design Process Management
    13 years 10 months ago
    Implications of Alternative Multilevel Design Methods for Design Process Management
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    Multilevel design problems are typically decomposed into a hierarchy of distributed and strongly coupled sub-problems, each solved by design teams with specialized knowledge and t...
    David Shahan, Carolyn Seepersad Seepersad
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