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» Application of Linguistic Techniques for Use Case Analysis
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BMCBI
2008
142views more  BMCBI 2008»
13 years 11 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
BMCBI
2006
92views more  BMCBI 2006»
13 years 11 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...
BMCBI
2007
168views more  BMCBI 2007»
13 years 11 months ago
Bayesian model-based inference of transcription factor activity
Background: In many approaches to the inference and modeling of regulatory interactions using microarray data, the expression of the gene coding for the transcription factor is co...
Simon Rogers, Raya Khanin, Mark Girolami
BMCBI
2005
156views more  BMCBI 2005»
13 years 11 months ago
A new dynamical layout algorithm for complex biochemical reaction networks
Background: To study complex biochemical reaction networks in living cells researchers more and more rely on databases and computational methods. In order to facilitate computatio...
Katja Wegner, Ursula Kummer
ASPLOS
2009
ACM
14 years 11 months ago
CTrigger: exposing atomicity violation bugs from their hiding places
Multicore hardware is making concurrent programs pervasive. Unfortunately, concurrent programs are prone to bugs. Among different types of concurrency bugs, atomicity violation bu...
Soyeon Park, Shan Lu, Yuanyuan Zhou