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» Approximate Global Alignment of Sequences
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RECOMB
2006
Springer
14 years 9 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
TCBB
2010
114views more  TCBB 2010»
13 years 7 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
14 years 10 days ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
14 years 2 months ago
Distributed Intersection Join of Complex Interval Sequences
In many different application areas, e.g. space observation systems or engineering systems of world-wide operating companies, there is a need for an efficient distributed intersect...
Hans-Peter Kriegel, Peter Kunath, Martin Pfeifle, ...
SDM
2003
SIAM
183views Data Mining» more  SDM 2003»
13 years 10 months ago
ApproxMAP: Approximate Mining of Consensus Sequential Patterns
Conventional sequential pattern mining methods may meet inherent difficulties in mining databases with long sequences and noise. They may generate a huge number of short and trivi...
Hye-Chung Kum, Jian Pei, Wei Wang 0010, Dean Dunca...