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» Approximate Global Alignment of Sequences
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JCB
2007
94views more  JCB 2007»
13 years 7 months ago
Locality and Gaps in RNA Comparison
Locality is an important and well-studied notion in comparative analysis of biological sequences. Similarly, taking into account affine gap penalties when calculating biological ...
Rolf Backofen, Shihyen Chen, Danny Hermelin, Gad M...
BMCBI
2007
134views more  BMCBI 2007»
13 years 7 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
MICCAI
2004
Springer
14 years 8 months ago
Spatio-Temporal Free-Form Registration of Cardiac MR Image Sequences
In this paper we develop a spatio-temporal registration algorithm for cardiac MR image sequences. The algorithm has the ability to correct any spatial misalignment between the imag...
Dimitrios Perperidis, Raad Mohiaddin, Daniel Rueck...
MICRO
1998
IEEE
139views Hardware» more  MICRO 1998»
13 years 12 months ago
Better Global Scheduling Using Path Profiles
Path profiles record the frequencies of execution paths through a program. Until now, the best global instruction schedulers have relied upon profile-gathered frequencies of condi...
Cliff Young, Michael D. Smith
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
14 years 1 months ago
Multiple Structural RNA Alignment with Lagrangian Relaxation
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
Markus Bauer, Gunnar W. Klau, Knut Reinert