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» Approximate Global Alignment of Sequences
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CVPR
2009
IEEE
15 years 2 months ago
Global Connectivity Potentials for Random Field Models
Markov random field (MRF, CRF) models are popular in computer vision. However, in order to be computationally tractable they are limited to incorporate only local interactions a...
Sebastian Nowozin, Christoph H. Lampert
3DPVT
2006
IEEE
169views Visualization» more  3DPVT 2006»
13 years 11 months ago
Qualitative Characterization of Deforming Surfaces
This paper extends the idea of classification schemes for static surface curvature into the temporal domain. We seek to identify regions in sequences of depth data that exhibit va...
T. C. Lukins, R. B. Fisher
FPL
2008
Springer
150views Hardware» more  FPL 2008»
13 years 9 months ago
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
Betul Buyukkurt, Walid A. Najjar
BMCBI
2004
154views more  BMCBI 2004»
13 years 7 months ago
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Background: With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than ...
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasil...
BMCBI
2006
242views more  BMCBI 2006»
13 years 7 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage