Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
We develop a method for performing boolean convolutions efficiently in word RAM model of computation, having a word size of w = Ω(log n) bits, where n is the input size. The tech...
: Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)space and almost always runs in O(k.n)-...
Abstract. We present a method to speed up approximate string matching by mapping the factual alphabet to a smaller alphabet. We apply the alphabet reduction scheme to a tuned versi...