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» Approximate Reasoning Based on Similarity
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BMCBI
2007
128views more  BMCBI 2007»
13 years 7 months ago
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 1 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
ICCBR
2010
Springer
13 years 5 months ago
Taxonomic Semantic Indexing for Textual Case-Based Reasoning
Abstract. Case-Based Reasoning (CBR) solves problems by reusing past problemsolving experiences maintained in a casebase. The key CBR knowledge container therefore is its casebase....
Juan A. Recio-García, Nirmalie Wiratunga
JASIS
2007
125views more  JASIS 2007»
13 years 7 months ago
Approximate personal name-matching through finite-state graphs
cience Abstracts and Science Citation Index Expanded databases. The evaluation involved calculating the measures of precision and recall, based on completeness and accuracy. The re...
Carmen Galvez, Félix de Moya Anegón
BMCBI
2008
158views more  BMCBI 2008»
13 years 7 months ago
Metrics for GO based protein semantic similarity: a systematic evaluation
Background: Several semantic similarity measures have been applied to gene products annotated with Gene Ontology terms, providing a basis for their functional comparison. However,...
Catia Pesquita, Daniel Faria, Hugo P. Bastos, Ant&...