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COCOON
2010
Springer
13 years 11 months ago
A Three-String Approach to the Closest String Problem
Given a set of n strings of length L and a radius d, the closest string problem (CSP for short) asks for a string tsol that is within a Hamming distance of d to each of the given ...
Zhi-Zhong Chen, Bin Ma, Lusheng Wang
ALMOB
2006
97views more  ALMOB 2006»
13 years 7 months ago
The approximability of the String Barcoding problem
The String Barcoding (SBC) problem, introduced by Rash and Gusfield (RECOMB, 2002), consists in finding a minimum set of substrings that can be used to distinguish between all mem...
Giuseppe Lancia, Romeo Rizzi
MJ
2006
138views more  MJ 2006»
13 years 7 months ago
A CAM-based keyword match processor architecture
This paper demonstrates a keyword match processor capable of performing fast dictionary search with approximate match capability. Using a content addressable memory with processor...
Long Bu, John A. Chandy
BIRTHDAY
2004
Springer
14 years 28 days ago
Formal Properties of Gene Assembly: Equivalence Problem for Overlap Graphs
del based on (overlap) graphs. The latter is more abstract because the translation of legal strings into overlap graphs is not injective. In this paper we consider and solve the ov...
Tero Harju, Ion Petre, Grzegorz Rozenberg
DEBU
2010
108views more  DEBU 2010»
13 years 7 months ago
Weighted Set-Based String Similarity
Consider a universe of tokens, each of which is associated with a weight, and a database consisting of strings that can be represented as subsets of these tokens. Given a query st...
Marios Hadjieleftheriou, Divesh Srivastava