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» Approximating the 2-Interval Pattern Problem
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CPM
2005
Springer
206views Combinatorics» more  CPM 2005»
14 years 3 months ago
A Fast Algorithm for Approximate String Matching on Gene Sequences
Abstract. Approximate string matching is a fundamental and challenging problem in computer science, for which a fast algorithm is highly demanded in many applications including tex...
Zheng Liu, Xin Chen, James Borneman, Tao Jiang
CPM
2009
Springer
94views Combinatorics» more  CPM 2009»
14 years 4 months ago
Online Approximate Matching with Non-local Distances
Abstract. A black box method was recently given that solves the problem of online approximate matching for a class of problems whose distance functions can be classified as being ...
Raphaël Clifford, Benjamin Sach
CPM
1999
Springer
127views Combinatorics» more  CPM 1999»
14 years 2 months ago
A New Indexing Method for Approximate String Matching
We present a new indexing method for the approximate string matching problem. The method is based on a su x tree combined with a partitioning of the pattern. We analyze the resulti...
Gonzalo Navarro, Ricardo A. Baeza-Yates
BMCBI
2006
138views more  BMCBI 2006»
13 years 10 months ago
Approximation properties of haplotype tagging
Background: Single nucleotide polymorphisms (SNPs) are locations at which the genomic sequences of population members differ. Since these differences are known to follow patterns,...
Staal A. Vinterbo, Stephan Dreiseitl, Lucila Ohno-...
FOCS
1999
IEEE
14 years 2 months ago
Approximate Nearest Neighbor Algorithms for Hausdorff Metrics via Embeddings
Hausdorff metrics are used in geometric settings for measuring the distance between sets of points. They have been used extensively in areas such as computer vision, pattern recog...
Martin Farach-Colton, Piotr Indyk