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» Approximation of protein structure for fast similarity measu...
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ISMB
2003
13 years 8 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
RECOMB
1999
Springer
13 years 11 months ago
Fast detection of common geometric substructure in proteins
We consider the problem of identifying common three-dimensional substructures between proteins. Our method is based on comparing the shape of the α-carbon backbone structures of ...
L. Paul Chew, Daniel P. Huttenlocher, Klara Kedem,...
TCBB
2010
104views more  TCBB 2010»
13 years 5 months ago
Fast Hinge Detection Algorithms for Flexible Protein Structures
— Analysis of conformational changes is one of the keys to the understanding of protein functions and interactions. For the analysis, we often compare two protein structures, tak...
Tetsuo Shibuya
BMCBI
2007
136views more  BMCBI 2007»
13 years 6 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
BMCBI
2006
150views more  BMCBI 2006»
13 years 6 months ago
Protein structure similarity from principle component correlation analysis
Background: Owing to rapid expansion of protein structure databases in recent years, methods of structure comparison are becoming increasingly effective and important in revealing...
Xiaobo Zhou, James Chou, Stephen T. C. Wong