Sciweavers

276 search results - page 4 / 56
» Approximation of protein structure for fast similarity measu...
Sort
View
APBC
2007
110views Bioinformatics» more  APBC 2007»
13 years 8 months ago
Fast Structural Similarity Search Based on Topology String Matching
ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...
Sung-Hee Park, David Gilbert, Keun Ho Ryu
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 6 hour ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
BMCBI
2005
131views more  BMCBI 2005»
13 years 6 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...
BMCBI
2010
139views more  BMCBI 2010»
13 years 6 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang
ICDE
2006
IEEE
239views Database» more  ICDE 2006»
14 years 23 days ago
Grid Representation for Efficient Similarity Search in Time Series Databases
Widespread interest in time-series similarity search has made more in need of efficient technique, which can reduce dimensionality of the data and then to index it easily using a ...
Guifang Duan, Yu Suzuki, Kyoji Kawagoe