APBC 2007 - PDF Preprint Papers

APBC 2007

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APBC
2007

110views Bioinformatics» more APBC 2007»

Fast Structural Similarity Search Based on Topology String Matching

14 years 19 days ago

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ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...

Sung-Hee Park, David Gilbert, Keun Ho Ryu

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Id	Views	Title	Status

1	110	Fast Structural Similarity Search Based on Topology String Matching	claim
2	105	Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway Detection	claim
3	96	Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions	claim
4	95	All Hits All The Time: Parameter Free Calculation of Seed Sensitivity	claim
5	92	Computing the Quartet Distance Between Evolutionary Trees of Bounded Degree	claim
6	91	Algorithmic Approaches to Selecting Control Clones in DNA Array Hybridization Experiments	claim
7	90	A Global Maximum Likelihood Super-Quartet Phylogeny Method	claim
8	86	Fitting Protein Chains to Cubic Lattice is NP-Complete	claim
9	81	Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry	claim
10	80	Using Formal Concept Analysis for Microarray Data Comparison	claim
11	79	The Distance Between Randomly Constructed Genomes	claim
12	79	Computing the Breakpoint Distance between Partially Ordered Genomes	claim
13	79	Simple and Fast Alignment of Metabolic Pathways by Exploiting Local Diversity	claim
14	77	Exact and Heuristic Approaches for Identifying Disease-Associated SNP Motifs	claim
15	75	Inferring Gene Regulatory Networks by Machine Learning Methods	claim
16	74	Combining N-grams and Alignment in G-protein Coupling Specificity Prediction	claim
17	74	Subtle Motif Discovery for Detection of DNA Regulatory Sites	claim
18	74	A Probabilistic Method to Identify Compensatory Substitutions for Pathogenic Mutations	claim
19	73	Protein Structure-Structure Alignment with Discrete Fr'echet Distance	claim
20	73	An Effective Promoter Detection Method using the Adaboost Algorithm	claim
21	69	Selecting Genes with Dissimilar Discrimination Strength for Sample Class Prediction	claim
22	69	Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison	claim
23	67	Genotype-Based Case-Control Analysis, Violation of Hardy-Weinberg Equilibrium, and Phase Diagrams	claim
24	66	Exploring Genome Rearrangements using Virtual Hybridization	claim
25	62	Gene Regulatory Network Inference via Regression Based Topological Refinement	claim
26	60	Semi-supervised Pattern Learning for Extracting Relations from Bioscience Texts	claim
27	55	Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees	claim

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