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» Assessing agreement of clustering methods with gene expressi...
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CIDM
2007
IEEE
14 years 1 months ago
Mining Subspace Correlations
— In recent applications of clustering such as gene expression microarray analysis, collaborative filtering, and web mining, object similarity is no longer measured by physical ...
Rave Harpaz, Robert M. Haralick
BMCBI
2008
103views more  BMCBI 2008»
13 years 7 months ago
Discovering multi-level structures in bio-molecular data through the Bernstein inequality
Background: The unsupervised discovery of structures (i.e. clusterings) underlying data is a central issue in several branches of bioinformatics. Methods based on the concept of s...
Alberto Bertoni, Giorgio Valentini
IJBRA
2007
89views more  IJBRA 2007»
13 years 7 months ago
Conservative adjustment of permutation p-values when the number of permutations is limited
The permutation procedure is widely used to assess the significance level (p-value) of a test statistic. This approach is asymptotically consistent. In genomics and proteomics st...
Yinglei Lai
BMCBI
2010
139views more  BMCBI 2010»
13 years 7 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
BMCBI
2008
129views more  BMCBI 2008»
13 years 7 months ago
Gene set enrichment analysis for non-monotone association and multiple experimental categories
Background: Recently, microarray data analyses using functional pathway information, e.g., gene set enrichment analysis (GSEA) and significance analysis of function and expression...
Rongheng Lin, Shuangshuang Dai, Richard D. Irwin, ...