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BMCBI
2008
117views more  BMCBI 2008»
13 years 8 months ago
Using a logical model to predict the growth of yeast
Background: A logical model of the known metabolic processes in S. cerevisiae was constructed from iFF708, an existing Flux Balance Analysis (FBA) model, and augmented with inform...
Ken E. Whelan, Ross D. King
CORR
2008
Springer
118views Education» more  CORR 2008»
13 years 8 months ago
Distributed Constrained Optimization with Semicoordinate Transformations
Recent work has shown how information theory extends conventional full-rationality game theory to allow bounded rational agents. The associated mathematical framework can be used ...
William G. Macready, David Wolpert
IANDC
2008
105views more  IANDC 2008»
13 years 8 months ago
Symbolic protocol analysis for monoidal equational theories
We are interested in the design of automated procedures for analyzing the (in)security of cryptographic protocols in the Dolev-Yao model for a bounded number of sessions when we t...
Stéphanie Delaune, Pascal Lafourcade, Denis...
BMCBI
2007
124views more  BMCBI 2007»
13 years 8 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
IJHPCA
2008
131views more  IJHPCA 2008»
13 years 8 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...