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BMCBI
2006
114views more  BMCBI 2006»
13 years 9 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
AOSD
2009
ACM
14 years 4 months ago
Dependent advice: a general approach to optimizing history-based aspects
Many aspects for runtime monitoring are history-based: they contain pieces of advice that execute conditionally, based on the observed execution history. History-based aspects are...
Eric Bodden, Feng Chen, Grigore Rosu
BIBE
2010
IEEE
143views Bioinformatics» more  BIBE 2010»
13 years 10 months ago
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy
- Metagenomics is the study of environmental samples. Because few tools exist for metagenomic analysis, a natural step has been to utilize the popular homology tool, BLAST, to sear...
Steven D. Essinger, Gail L. Rosen
ICEGOV
2009
ACM
13 years 7 months ago
A web-based performance monitoring system for e-government services
An e-Government portal represents not only a reputable public image of the sovereignty of a region, it is responsible for serving many users from local citizens and beyond, in a r...
Simon Fong, Ho Si Meng
BMCBI
2008
148views more  BMCBI 2008»
13 years 9 months ago
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
Background: Liquid chromatography coupled to mass spectrometry (LC-MS) has become a prominent tool for the analysis of complex proteomics and metabolomics samples. In many applica...
Eva Lange, Ralf Tautenhahn, Steffen Neumann, Cleme...