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» Automated group assignment in large phylogenetic trees using...
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BMCBI
2007
86views more  BMCBI 2007»
13 years 11 months ago
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, ...
BMCBI
2006
116views more  BMCBI 2006»
13 years 11 months ago
TaxMan: a taxonomic database manager
Background: Phylogenetic analysis of large, multiple-gene datasets, assembled from public sequence databases, is rapidly becoming a popular way to approach difficult phylogenetic ...
Martin Jones, Mark Blaxter
BMCBI
2006
112views more  BMCBI 2006»
13 years 11 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
BMCBI
2006
107views more  BMCBI 2006»
13 years 11 months ago
Simplifying gene trees for easier comprehension
Background: In the genomic age, gene trees may contain large amounts of data making them hard to read and understand. Therefore, an automated simplification is important. Results:...
Paul-Ludwig Lott, Marvin Mundry, Christoph Sassenb...
BMCBI
2008
130views more  BMCBI 2008»
13 years 11 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen