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» Automatic generation of a parallel sorting algorithm
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BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
IESS
2007
Springer
156views Hardware» more  IESS 2007»
14 years 1 months ago
Automatic Data Path Generation from C code for Custom Processors
The stringent performance constraints and short time to market of modern digital systems require automatic methods for design of high performance applicationspecific architectures...
Jelena Trajkovic, Daniel Gajski
ICS
2005
Tsinghua U.
14 years 1 months ago
Automatic generation and tuning of MPI collective communication routines
In order for collective communication routines to achieve high performance on different platforms, they must be able to adapt to the system architecture and use different algori...
Ahmad Faraj, Xin Yuan
SAC
2003
ACM
14 years 23 days ago
Automatic Code Generation for a Convection Scheme
Traditional design and implementation of large atmospheric models is a difficult, tedious and error prone task. With the CTADEL project we investigate a new method of code genera...
Paul van der Mark, Lex Wolters, Gerard Cats
TPDS
2002
136views more  TPDS 2002»
13 years 7 months ago
Automatic Partitioning of Parallel Loops with Parallelepiped-Shaped Tiles
In this paper, an efficient algorithm to implement loop partitioning is introduced and evaluated. We start from results of Agarwal et al. [1] whose aim is to minimize the number of...
Fabrice Rastello, Yves Robert