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    BMCBI
    2007
    122views more  BMCBI 2007»
    TAP score: torsion angle propensity normalization applied to local protein structure evaluation
    13 years 8 months ago
    TAP score: torsion angle propensity normalization applied to local protein structure evaluation
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    Background: Experimentally determined protein structures may contain errors and require validation. Conformational criteria based on the Ramachandran plot are mainly used to disti...
    Silvio C. E. Tosatto, Roberto Battistutta
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    BMCBI
    2008
    122views more  BMCBI 2008»
    High-throughput bioinformatics with the Cyrille2 pipeline system
    13 years 8 months ago
    High-throughput bioinformatics with the Cyrille2 pipeline system
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    Background: Modern omics research involves the application of high-throughput technologies that generate vast volumes of data. These data need to be pre-processed, analyzed and in...
    Mark W. E. J. Fiers, Ate van der Burgt, Erwin Date...
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    BMCBI
    2007
    116views more  BMCBI 2007»
    primetv: a viewer for reconciled trees
    13 years 8 months ago
    primetv: a viewer for reconciled trees
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    Background: Evolutionary processes, such as gene family evolution or parasite-host cospeciation, can often be viewed as a tree evolving inside another tree. Relating two given tre...
    Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglun...
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    BMCBI
    2008
    121views more  BMCBI 2008»
    ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
    13 years 8 months ago
    ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
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    Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
    Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
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    BMCBI
    2008
    85views more  BMCBI 2008»
    Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing dip
    13 years 8 months ago
    Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing dip
    Download  www.biomedcentral.com
    Background: Biological chemistry is very stereospecific. Nonetheless, the diastereotopic oxygen atoms of diphosphate-containing molecules in the Protein Data Bank (PDB) are often ...
    Christopher A. Bottoms, Dong Xu
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