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    BMCBI
    2008
    128views more  BMCBI 2008»
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
    13 years 8 months ago
    Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
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    Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
    Christopher Bystroff, Bobbie-Jo M. Webb-Robertson
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    BMCBI
    2010
    178views more  BMCBI 2010»
    An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
    13 years 8 months ago
    An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology
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    Background: Semantic similarity measures are useful to assess the physiological relevance of protein-protein interactions (PPIs). They quantify similarity between proteins based o...
    Shobhit Jain, Gary D. Bader
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    BMCBI
    2007
    91views more  BMCBI 2007»
    A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
    13 years 8 months ago
    A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
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    Background: Odorant binding proteins (OBPs) are believed to shuttle odorants from the environment to the underlying odorant receptors, for which they could potentially serve as od...
    Ganesan Pugalenthi, E. Ke Tang, Ponnuthurai N. Sug...
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    BMCBI
    2008
    173views more  BMCBI 2008»
    Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
    13 years 8 months ago
    Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
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    Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
    Stephen W. Tanner, Pankaj Agarwal
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    BMCBI
    2007
    109views more  BMCBI 2007»
    Computational RNA secondary structure design: empirical complexity and improved methods
    13 years 8 months ago
    Computational RNA secondary structure design: empirical complexity and improved methods
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    Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
    Rosalía Aguirre-Hernández, Holger H....
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