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» BetaWB: modelling and simulating biological processes
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SIAMSC
2008
131views more  SIAMSC 2008»
13 years 9 months ago
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
Many important physiological processes operate at time and space scales far beyond those accessible to atom-realistic simulations, and yet discrete stochastic rather than continuum...
Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Mar...
CMSB
2009
Springer
14 years 4 months ago
Approximation of Event Probabilities in Noisy Cellular Processes
Molecular noise, which arises from the randomness of the discrete events in the cell, significantly influences fundamental biological processes. Discrete-state continuous-time st...
Frédéric Didier, Thomas A. Henzinger...
ALIFE
2008
13 years 9 months ago
Natural or Internal Selection? The Case of Canalization in Complex Evolutionary Systems
Using biological examples and theoretical arguments, the case is presented for extending the notion of natural selection to include internal selection in order to account for the e...
Alexander Riegler
BMCBI
2008
77views more  BMCBI 2008»
13 years 10 months ago
Stochastic models for the in silico simulation of synaptic processes
Background: Research in life sciences is benefiting from a large availability of formal description techniques and analysis methodologies. These allow both the phenomena investiga...
Andrea Bracciali, Marcello Brunelli, Enrico Catald...
ICCMS
2009
118views more  ICCMS 2009»
13 years 7 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi