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OOPSLA
2007
Springer
14 years 1 months ago
Statistically rigorous java performance evaluation
Java performance is far from being trivial to benchmark because it is affected by various factors such as the Java application, its input, the virtual machine, the garbage collect...
Andy Georges, Dries Buytaert, Lieven Eeckhout
CIKM
2005
Springer
14 years 1 months ago
Optimizing candidate check costs for bitmap indices
In this paper, we propose a new strategy for optimizing the placement of bin boundaries to minimize the cost of query evaluation using bitmap indices with binning. For attributes ...
Doron Rotem, Kurt Stockinger, Kesheng Wu
BMCBI
2010
143views more  BMCBI 2010»
13 years 7 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
BMCBI
2010
175views more  BMCBI 2010»
13 years 7 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
BMCBI
2007
113views more  BMCBI 2007»
13 years 7 months ago
PILER-CR: Fast and accurate identification of CRISPR repeats
Background: Sequencing of prokaryotic genomes has recently revealed the presence of CRISPR elements: short, highly conserved repeats separated by unique sequences of similar lengt...
Robert C. Edgar